Index

A

add_atom_indices (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute) add_bond_indices (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute) after_call() (xenopict.monkey.BoostModulePatcher method)

align (xenopict.declarative.types.XenopictSpec attribute) align_to() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method) all_dots() (xenopict.plotdot.PlotDot method) append() (xenopict.monkey.Patcher method) atoms (xenopict.declarative.types.MarkSpec attribute)

B

before_call() (xenopict.monkey.BoostModulePatcher method) boost_wrapper() (xenopict.monkey.BoostModulePatcher method)

BoostError BoostModulePatcher (class in xenopict.monkey) BoostTypeError

C

cmap (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute) color (xenopict.declarative.types.MoleculeSpec attribute) (xenopict.declarative.types.XenopictSpec attribute)

color_map() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method) copy() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method)

D

diverging_cmap (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute) dot_color() (xenopict.plotdot.PlotDot method) dot_radius() (xenopict.plotdot.PlotDot method) down_scale (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute)

draw_mol() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method) dummies_are_attachments (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute)

E

embed_script (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute)

F

filter() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method)

from_smarts() (xenopict.drawer.Xenopict class method) (xenopict.Xenopict class method)

G

get_cmap() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method)

get_ipython() (in module xenopict.magic) get_pandas() (in module xenopict.magic) groups (xenopict.drawer.Xenopict attribute)

H

halo (xenopict.declarative.types.MoleculeSpec attribute) (xenopict.declarative.types.XenopictSpec attribute)

halo() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method)

I

id (xenopict.declarative.types.MoleculeSpec attribute) install() (in module xenopict.magic) (xenopict.monkey.Patch method) (xenopict.monkey.Patcher method) (xenopict.monkey.Replace method)

install_colormaps() (in module xenopict.colormap)

M

mark (xenopict.declarative.types.MoleculeSpec attribute) mark_atoms() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method) mark_down_scale (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute) mark_substructure() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method) MarkSpec (class in xenopict.declarative.types) model_config (xenopict.declarative.types.MarkSpec attribute) (xenopict.declarative.types.MoleculeSpec attribute) (xenopict.declarative.types.XenopictSpec attribute)

module xenopict xenopict.colormap xenopict.declarative xenopict.declarative.types xenopict.drawer xenopict.magic xenopict.monkey xenopict.plotdot mol (xenopict.drawer.Xenopict attribute) molecules (xenopict.declarative.types.XenopictSpec attribute) MoleculeSpec (class in xenopict.declarative.types)

O

on_throw() (xenopict.monkey.BoostModulePatcher method)

optimize_svg (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute)

P

parse() (in module xenopict) (in module xenopict.declarative) Patch (class in xenopict.monkey) patch_pandas() (in module xenopict.magic)

patch_rdkit() (in module xenopict.magic) Patcher (class in xenopict.monkey) plot_dot (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute) PlotDot (class in xenopict.plotdot)

R

reframe() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method) register_before_call() (xenopict.monkey.BoostModulePatcher method) register_list_mol() (in module xenopict.magic)

register_minidom() (in module xenopict.magic) register_rdkit() (in module xenopict.magic) Replace (class in xenopict.monkey) replace() (xenopict.monkey.Patcher method)

S

scale (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute) set_backbone_color() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method) shade() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method) shade_substructure() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method)

shapely_resolution (xenopict.drawer.Xenopict attribute) (xenopict.Xenopict attribute) single_dot() (xenopict.plotdot.PlotDot method) smiles (xenopict.declarative.types.MoleculeSpec attribute) substructure_atoms (xenopict.declarative.types.MarkSpec attribute) substructure_bonds (xenopict.declarative.types.MarkSpec attribute) substructure_focus() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method)

T

to_html() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method)

to_svg() (xenopict.drawer.Xenopict method) (xenopict.Xenopict method)

U

uninstall() (xenopict.monkey.Patch method) (xenopict.monkey.Patcher method) (xenopict.monkey.Replace method)

V

validate_mark_spec() (xenopict.declarative.types.MarkSpec method)

W

Wrap (class in xenopict.monkey)

wrap() (xenopict.monkey.Replace method) (xenopict.monkey.Wrap method)

X

xenopict module Xenopict (class in xenopict) (class in xenopict.drawer) xenopict.colormap module xenopict.declarative module xenopict.declarative.types module

xenopict.drawer module xenopict.magic module xenopict.monkey module xenopict.plotdot module XenopictSpec (class in xenopict.declarative.types)